Setting up your environment for processing
We recommend to install MNE as a standalone installer.
The data of the MNE environment will be under C:\ProgramData\mne-python\1.6.1_0
You can setup Pycharm to use this environment as a Python environment for your pipeline project.
The configuration file for setting SUBJECTS_DIR
, the directory to the data of your subject, can be set in:
C:\Users\user_name\.mne\mne-python.json
Installing freesurfer on windows
Configure WSL2 on windows
Access the files of the ubuntu distribution by typing \\wsl$\Ubuntu
in the file explorer in windows.
Install freesurfer following their documentation page. https://surfer.nmr.mgh.harvard.edu/fswiki/FS7_wsl_ubuntu